Alluvial plot of patients across cluster counts and important features

Usage

alluvial_cluster_plot(
  cluster_sequence,
  similarity_matrix,
  data_list = NULL,
  data = NULL,
  key_outcome,
  key_label = key_outcome,
  extra_outcomes = NULL,
  title = NULL
)

Arguments

cluster_sequence: A list of clustering algorithms (typically, the same algorithm varied over different numbers of clusters).
similarity_matrix: A similarity matrix.
data_list: A nested list of input data from generate_data_list().
data: A dataframe that contains features to include in the plot.
key_outcome: The name of the feature that determines how each patient stream is coloured in the alluvial plot.
key_label: Name of key outcome to be used for the plot legend.
extra_outcomes: Names of additional features to add to the plot.
title: Title of the plot.