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Heatmap of observation co-clustering across resampled data.

Source: R/coclustering.R
cocluster_heatmap.Rd

Create a heatmap that shows the distribution of observation co-clustering across resampled data.

Usage

cocluster_heatmap(
  cocluster_df,
  cluster_rows = TRUE,
  cluster_columns = TRUE,
  show_row_names = FALSE,
  show_column_names = FALSE,
  data_list = NULL,
  data = NULL,
  left_bar = NULL,
  right_bar = NULL,
  top_bar = NULL,
  bottom_bar = NULL,
  left_hm = NULL,
  right_hm = NULL,
  top_hm = NULL,
  bottom_hm = NULL,
  annotation_colours = NULL,
  min_colour = NULL,
  max_colour = NULL,
  ...
)

Arguments

cocluster_df

A dataframe containing coclustering data for a single cluster solution. This object is generated by the calculate_coclustering function.

cluster_rows

Argument passed to ComplexHeatmap::Heatmap().

cluster_columns

Argument passed to ComplexHeatmap::Heatmap().

show_row_names

Argument passed to ComplexHeatmap::Heatmap().

show_column_names

Argument passed to ComplexHeatmap::Heatmap().

data_list

See ?similarity_matrix_heatmap.

data

See ?similarity_matrix_heatmap.

left_bar

See ?similarity_matrix_heatmap.

right_bar

See ?similarity_matrix_heatmap.

top_bar

See ?similarity_matrix_heatmap.

bottom_bar

See ?similarity_matrix_heatmap.

left_hm

See ?similarity_matrix_heatmap.

right_hm

See ?similarity_matrix_heatmap.

top_hm

See ?similarity_matrix_heatmap.

bottom_hm

See ?similarity_matrix_heatmap.

annotation_colours

See ?similarity_matrix_heatmap.

min_colour

See ?similarity_matrix_heatmap.

max_colour

See ?similarity_matrix_heatmap.

...

Arguments passed to ComplexHeatmap::Heatmap().

Value

Heatmap (class "Heatmap" from ComplexHeatmap) object showing the distribution of observation co-clustering across resampled data.