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Manhattan plot of feature-cluster association p-values

Usage

esm_manhattan_plot(
  esm,
  neg_log_pval_thresh = 5,
  threshold = NULL,
  point_size = 5,
  jitter_width = 0.1,
  jitter_height = 0.1,
  text_size = 15,
  plot_title = NULL,
  hide_x_labels = FALSE,
  bonferroni_line = FALSE
)

Arguments

esm

Extended solutions matrix storing associations between features and cluster assignments. See ?extend_solutions.

neg_log_pval_thresh

Threshold for negative log p-values.

threshold

P-value threshold to plot dashed line at.

point_size

Size of points in the plot.

jitter_width

Width of jitter.

jitter_height

Height of jitter.

text_size

Size of text in the plot.

plot_title

Title of the plot.

hide_x_labels

If TRUE, hides x-axis labels.

bonferroni_line

If TRUE, plots a dashed black line at the Bonferroni-corrected equivalent of the p-value threshold.

Value

A Manhattan plot (class "gg", "ggplot") showing the association p-values of features against each solution in the provided solutions matrix.