Heatmap of p-values
Usage
pval_heatmap(
pvals,
order = NULL,
cluster_columns = TRUE,
cluster_rows = FALSE,
show_row_names = FALSE,
show_column_names = TRUE,
min_colour = "red2",
mid_colour = "lightyellow",
max_colour = "slateblue4",
legend_breaks = c(0, 0.5, 1),
col = circlize::colorRamp2(legend_breaks, c(min_colour, mid_colour, max_colour)),
heatmap_legend_param = list(color_bar = "continuous", title = "p-value", at = c(0, 0.5,
1)),
rect_gp = grid::gpar(col = "black"),
column_split_vector = NULL,
row_split_vector = NULL,
column_split = NULL,
row_split = NULL,
...
)Arguments
- pvals
A matrix of p-values.
- order
Numeric vector containing row order of the heatmap.
- cluster_columns
Whether columns should be sorted by hierarchical clustering.
- cluster_rows
Whether rows should be sorted by hierarchical clustering.
- show_row_names
Whether row names should be shown.
- show_column_names
Whether column names should be shown.
- min_colour
Colour used for the lowest value in the heatmap.
- mid_colour
Colour used for the middle value in the heatmap.
- max_colour
Colour used for the highest value in the heatmap.
- legend_breaks
Numeric vector of breaks for the legend.
- col
Colour function for
ComplexHeatmap::Heatmap()- heatmap_legend_param
Legend function for
ComplexHeatmap::Heatmap()- rect_gp
Cell border function for
ComplexHeatmap::Heatmap()- column_split_vector
Vector of indices to split columns by.
- row_split_vector
Vector of indices to split rows by.
- column_split
Standard parameter of
ComplexHeatmap::Heatmap.- row_split
Standard parameter of
ComplexHeatmap::Heatmap.- ...
Additional parameters passed to
ComplexHeatmap::Heatmap.