Scales settings matrix values between 0 and 1 and plots as a heatmap. Rows can be reordered to match prior meta clustering results.
Usage
settings_matrix_heatmap(
settings_matrix,
order = NULL,
remove_fixed_columns = TRUE,
show_column_names = TRUE,
show_row_names = TRUE,
rect_gp = grid::gpar(col = "black"),
colour_breaks = c(0, 1),
colours = c("black", "darkseagreen"),
column_split_vector = NULL,
row_split_vector = NULL,
column_split = NULL,
row_split = NULL,
column_title = NULL,
...
)Arguments
- settings_matrix
Matrix indicating parameters to iterate SNF through.
- order
Numeric vector indicating row ordering of settings matrix.
- remove_fixed_columns
Whether columns that have no variation should be removed.
- show_column_names
Whether column names should be shown.
- show_row_names
Whether row names should be shown.
- rect_gp
Cell border function for
ComplexHeatmap::Heatmap.- colour_breaks
Numeric vector of breaks for the legend.
- colours
Vector of colours to use for the heatmap. Should match the length of colour_breaks.
- column_split_vector
Vector of indices to split columns by.
- row_split_vector
Vector of indices to split rows by.
- column_split
Standard parameter of
ComplexHeatmap::Heatmap.- row_split
Standard parameter of
ComplexHeatmap::Heatmap.- column_title
Standard parameter of
ComplexHeatmap::Heatmap.- ...
Additional parameters passed to
ComplexHeatmap::Heatmap.